Boxplot of relative abundance — Relative_gene

Generate boxplot of cell type specific relative abundance for each subjects

Relative_gene_boxplot(
  sc.sce,
  gene.name,
  nu = 10^{
     -10
 },
  marker.id = NULL,
  log.trans = TRUE,
  select.ct = NULL,
  ...
)

Arguments

sc.sce: ExpressionSet for single cell data
gene.name: character, for gene name
nu: numeric regulator for log transformation
marker.id: numeric indicator of cell type marker genes. Order in the select cell types. Default is NULL. If NULL, do not print out the cell type.
log.trans: logical, default as TRUE. If FALSE, do not take log transformation of relative abundance.
select.ct: vector of characters. Default is NULL. If NULL use all cell types provided. Otherwise select cell types provided.

a 'ggplot' object with [ggplot2::geom_boxplot]